Postdoctoral researcher computational workflow development for single-cell data analysis (19229) -...
Ghent University
Gent, Belgium
4 dagen geleden
source : Euraxess

Apply before 01 / 07 / 2021 23 : 59 (Brussels Time)

Faculty of Sciences

Department : WE09 - Plantenbiotechnologie en Bio-informatica

Occupancy rate : 100%

Number of positions : Type of employment : Contract of unlimited duration with clause

Term of assignment : 20 months

Wage scale : PD1 to PD4 (doctoral degree)

Required diploma : PhD

ABOUT GHENT UNIVERSITY

Ghent University is a world of its own. Employing more than 8,000 people, it is actively involved in education and research, management and administration, as well as technical and social service provision on a daily basis.

It is one of the largest, most exciting employers in the area and offers great career opportunities. With its 11 faculties and more than 80 departments offering state-of-the-art study programmes grounded in research in a wide range of academic fields, Ghent University is a logical choice for its staff and students.

YOUR TASKS

  • At least 90% of your assignment will be spent on academic research.
  • Development of workflows to Retrieve, process and curate plant trait information from dedicated databases and literature (via text-mining and natural language processing).
  • Process and store ontologies and gene-trait information in a relational database

  • Development and benchmarking of a command-line Nextflow pipeline to perform gene-trait discovery using single-cell RNA-Seq, network biology and curated plant trait data
  • Evaluation of the developed gene-trait discovery pipeline using newly generated single-cell datasets for different crop plants
  • Optional : interactions with (inter)national industrial / academic partners working on single-cell genomics and valorization.
  • WHAT WE ARE LOOKING FOR

    We are looking for a junior postdoctoral researcher to work on computational workflow development for single-cell data analysis in plants .

    This project is fully funded by UGent for 20 months (extension is possible) and ideally starts September 2021. The successful applicant will be part of the VIB-UGent (Vandepoele) lab, an international, diverse, and vibrant group of research fellows at different career levels.

    More info about the city of Ghent and the VIB Center for Plant System Biology can be found below.

  • You hold a thesis-based doctorate in Bioinformatics, Computational biology or similar (obtained max. 2 years ago. This term of 2 years is determined by the date written on the above-mentioned required diploma).
  • Having good programming (Python) and Linux skills is a must; experience with Nextflow pipelines is an asset.
  • You like and have experience with software / workflow / tool development.
  • Knowledge in plant or single-cell biology is a plus but not essential.
  • You are enthusiastic about computational tool development and want to learn more about applying computational biology for single-cell data analysis.
  • You have good communication skills and are proficient in English.
  • WHAT WE CAN OFFER YOU

  • We offer you a contract of fixed duration with a maximum term of almost 2 years.
  • Your contract will start on 1 / 09 / 2021 at the earliest.
  • Your remuneration will be determined by salary scale PD1. .
  • All Ghent University staff members enjoy a number of benefits, such as a wide range of training and education opportunities, 35 days of holiday leave (on an annual basis for a full-time job) supplemented by annual fixed bridge days, a bicycle allowance and eco vouchers.. (in Dutch).
  • INTERESTED?

    Apply online through the e-recruitment system before the application deadline (see above). We do not accept late applications or applications that are not submitted through the online system.

    Your application must include the following documents :

  • In the field CV’ : your CV incl. an overview of your programming / IT skills
  • In the field Cover letter’ : your application letter in pdf format
  • In the field Diploma’ : a transcript of the required degree (if already in your possession). If you have a foreign diploma in a language other than our national languages (Dutch, French or German) or English, please add a translation in one of the mentioned languages.
  • In the field other documents : a short document providing contact information of 2 references (e-mail address and phone number).
  • Note that the maximum file size for each field is 10 MB.

    As Ghent University maintains an equal opportunities and diversity policy, everyone is encouraged to apply for this position.

    MORE INFORMATION

    For more information about this vacancy, please contact Prof. Klaas Vandepoele (

    About the city of Ghent and Flanders

    Ghent, the second largest city of Flanders, is a university city and cultural hub. Only half an hour away from Antwerp and Brussels by train, and centrally located in Europe, Ghent has a scenic yet cosy, well-preserved historical center and a lively multi-cultural atmosphere.

    Ghent and the greater region of Flanders is internationally-oriented and tech-minded with a strong biotechnology sector with spin-offs and start-ups, creating a natural home for researchers and their families.

    English is very widely spoken in the city and surrounding area.

    Ghent is home to Ghent University, a top 100 university, founded in 1817 and one of the major universities in Belgium. The university credo is Dare to Think’, challenging everyone to question conventional views and to dare to take a nuanced stand.

    Ghent University is a pluralistic university, which means it is open to all, regardless of ideological, political, cultural, or social background.

    Ghent and its surrounding area is a great place for young people and families to live and to raise children. There are many excellent day care centers and schools, including an international school.

    About VIB Center for Plant System Biology

    The VIB Center for Plant Systems Biology is one of the world leading centers for advanced plant sciences. The Comparative Network Biology lab, led by Klaas Vandepoele, of the VIB Center for Plant Systems Biology is home to an enthusiastic, diverse and international group of researchers in the field plant bioinformatics.

    Beyond our expertise in plant genomics, comparative genomics and scientific creativity, we are looking for a new team member to develop new computational approaches for integrative network biology in crops.

    Do you have a question? Please read our

    Required Research Experiences

  • RESEARCH FIELD Biological sciences
  • YEARS OF RESEARCH EXPERIENCE 4 - 10
  • RESEARCH FIELD Biological sciences
  • YEARS OF RESEARCH EXPERIENCE 4 - 10
  • RESEARCH FIELD Biological sciences
  • YEARS OF RESEARCH EXPERIENCE 4 - 10
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